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Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST041335
species: Populus trichocarpa
miRNA family: MIR166
source: miRBase, original name: ptc-MIR166n (MI0002231)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCTT

miRNA*
GGAATGAAGTTTGATCCAAGA

mismatches: 4
bulges: 0

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pre-miRNA
AAGGGGTGTTTGGAATGAAGTTTGATCCAAGATCCTTGTCTCTCCCGTTAACTTAGTCTCTGTTACTGTTAGGTTTTCATTACTGAGTGTATTTGCAGCC
CCCTTGTCTGATTTTAGCATCATGAGAGTAGGAAGTGCTGGTGATCATAGGGTTTGGTTCAAGATCCATTTGACTCTTCTCTTTATATCTCTCCTGTGTC
CTAGCTGGTAATCTGTAGTAGTCTTAATTATCCCTTACTTCTTGTTAATTTTTAGGTTTGATCTTGCAAGTAATTATATTTGGAAAATATCATAAAATGA
TCTCGGACCAGGCTTCATTCCTTACACCTTG


dot-bracket secondary structure
..(((((((..(((((((((((((.(((.(((((..((....(((.....(((((((...((..(((....)))...))..))))))).(((((((((..
......(((((..((((((....((.((((((....(((((.((.(((((((...(((..((((...............))))...)))..)))))))))
))))).((((((....((....))..)))))).)))))))).))))))...))))).......))))))))).........)))......))......))
))).))).)))))))))))))..))))))).



SIMILARITIES
miRBase ptc-MIR166o: 9e-26

PMRD ptc-miR166n: 0

microPC miR166: 0.000004
UniProt no hits

RFAM mir-166: 0

Identical with: ptc-miR166n from PMRD (MNEST051638)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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